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Registro Completo |
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
24/04/2020 |
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Data da última atualização: |
24/04/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
PEREIRA, W. J.; MELO, A. T. de O.; COELHO, A. S. G.; RODRIGUES, F. A.; MAMIDI, S.; ALENCAR, S. A. de; LANNA, A. C.; VALDISSER, P. A. M. R.; BRONDANI, C.; NASCIMENTO JUNIOR, I. R. do; BORBA, T. C. de O.; VIANELLO, R. P. |
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Afiliação: |
WENDELL JACINTO PEREIRA, UFG; ARTHUR TAVARES DE OLIVEIRA MELO, UFG; ALEXANDRE SIQUEIRA GUEDES COELHO, UFG; FABIANA APARECIDA RODRIGUES; SUJAN MAMIDI, HUDSON ALPHA INSTITUTE FOR BIOTECHNOLOGY, Huntsville-AL; SERGIO AMORIM DE ALENCAR, UNIVERSIDADE CATÓLICA DE BRASÍLIA; ANNA CRISTINA LANNA, CNPAF; PAULA ARIELLE M RIBEIRO VALDISSER, CNPAF; CLAUDIO BRONDANI, CNPAF; IVANILDO RAMALHO DO NASCIMENTO JUNIOR, UNESP, Jaboticabal-SP; TEREZA CRISTINA DE OLIVEIRA BORBA, CNPAF; ROSANA PEREIRA VIANELLO, CNPAF. |
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Título: |
Genome-wide analysis of the transcriptional response to drought stress in root and leaf of common bean. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Genetics and Molecular Biology, v. 43, n. 1, e20180259, 2020. |
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ISSN: |
1678-4685 |
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DOI: |
https://doi.org/10.1590/1678-4685-gmb-2018-0259 |
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Idioma: |
Inglês |
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Conteúdo: |
Genes related to the response to drought stress in leaf and root tissue of drought-susceptible (DS) and tolerant (DT) genotypes were characterized by RNA-Seq. In total, 54,750 transcripts, representative of 28,590 genes, were identified; of these, 1,648 were of high-fidelity (merge of 12 libraries) and described for the first time in the Andean germplasm. From the 1,239 differentially expressed genes (DEGs), 458 were identified in DT, with a predominance of genes in categories of oxidative stress, response to stimulus and kinase activity. Most genes related to oxidation-reduction terms in roots were early triggered in DT (T75) compared to DS (T150) suggestive of a mechanism of tolerance by reducing the damage from ROS. Among the KEGG enriched by DEGs up-regulated in DT leaves, two related to the formation of Sulfur-containing compounds, which are known for their involvement in tolerance to abiotic stresses, were common to all treatments. Through qPCR, 88.64% of the DEGs were validated. A total of 151,283 variants were identified and functional effects estimated for 85,780. The raw data files were submitted to the NCBI database. A transcriptome map revealed new genes and isoforms under drought. These results supports a better understanding of the drought tolerance mechanisms in beans. |
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Palavras-Chave: |
Functional genomics. |
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Thesagro: |
Deficiência Hídrica; Feijão; Folha; Phaseolus Vulgaris; Raiz. |
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Thesaurus Nal: |
Beans; Genomics; Single nucleotide polymorphism; Soil water deficit. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/212487/1/CNPAF-2020-GMB.pdf
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Marc: |
LEADER 02485naa a2200397 a 4500
001 2121822
005 2020-04-24
008 2020 bl uuuu u00u1 u #d
022 $a1678-4685
024 7 $ahttps://doi.org/10.1590/1678-4685-gmb-2018-0259$2DOI
100 1 $aPEREIRA, W. J.
245 $aGenome-wide analysis of the transcriptional response to drought stress in root and leaf of common bean.$h[electronic resource]
260 $c2020
520 $aGenes related to the response to drought stress in leaf and root tissue of drought-susceptible (DS) and tolerant (DT) genotypes were characterized by RNA-Seq. In total, 54,750 transcripts, representative of 28,590 genes, were identified; of these, 1,648 were of high-fidelity (merge of 12 libraries) and described for the first time in the Andean germplasm. From the 1,239 differentially expressed genes (DEGs), 458 were identified in DT, with a predominance of genes in categories of oxidative stress, response to stimulus and kinase activity. Most genes related to oxidation-reduction terms in roots were early triggered in DT (T75) compared to DS (T150) suggestive of a mechanism of tolerance by reducing the damage from ROS. Among the KEGG enriched by DEGs up-regulated in DT leaves, two related to the formation of Sulfur-containing compounds, which are known for their involvement in tolerance to abiotic stresses, were common to all treatments. Through qPCR, 88.64% of the DEGs were validated. A total of 151,283 variants were identified and functional effects estimated for 85,780. The raw data files were submitted to the NCBI database. A transcriptome map revealed new genes and isoforms under drought. These results supports a better understanding of the drought tolerance mechanisms in beans.
650 $aBeans
650 $aGenomics
650 $aSingle nucleotide polymorphism
650 $aSoil water deficit
650 $aDeficiência Hídrica
650 $aFeijão
650 $aFolha
650 $aPhaseolus Vulgaris
650 $aRaiz
653 $aFunctional genomics
700 1 $aMELO, A. T. de O.
700 1 $aCOELHO, A. S. G.
700 1 $aRODRIGUES, F. A.
700 1 $aMAMIDI, S.
700 1 $aALENCAR, S. A. de
700 1 $aLANNA, A. C.
700 1 $aVALDISSER, P. A. M. R.
700 1 $aBRONDANI, C.
700 1 $aNASCIMENTO JUNIOR, I. R. do
700 1 $aBORBA, T. C. de O.
700 1 $aVIANELLO, R. P.
773 $tGenetics and Molecular Biology$gv. 43, n. 1, e20180259, 2020.
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Registro original: |
Embrapa Arroz e Feijão (CNPAF) |
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| Registros recuperados : 5 | |
| 2. |  | REVERS, L. F.; PORTO, D. D.; FALAVIGNA, V. da S.; BRUNEAU, M.; ANZANELLO, R.; TESSELE, C.; ALENCAR, S. A. de; CZERMAINSKI, A. B. C.; PAPPAS JUNIOR, G. J.; RENOU, J.-P.; FIALHO, F. B.; SANTOS, H. P. dos; DENARDI, F.; KVITSCHAL, M. V.; PASQUALI, G.; MARGIS, M. M. A. N. P.; DELATORRE, C. A.; OLIVEIRA, P. R. D. de. Integrating genetics, genomics and modeling of bud dormancy to improve apple adaptation to climatic changes. In: INTERNATIONAL PLANT DORMANCY SYMPOSIUM, 5., Auckland, 2013. [Abstract and programme book]. [S.l.: ISSS: Plant & Food Research, 2013]. p. 77. Resumo.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Uva e Vinho. |
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| 3. | | PEREIRA, W. J.; MELO, A. T. de O.; COELHO, A. S. G.; RODRIGUES, F. A.; MAMIDI, S.; ALENCAR, S. A. de; LANNA, A. C.; VALDISSER, P. A. M. R.; BRONDANI, C.; NASCIMENTO JUNIOR, I. R. do; BORBA, T. C. de O.; VIANELLO, R. P. Genome-wide analysis of the transcriptional response to drought stress in root and leaf of common bean. Genetics and Molecular Biology, v. 43, n. 1, e20180259, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 4. | | PEREIRA, W. J.; ABREU, F. R. M.; MELO, A. T. de O.; COELHO, A. S. G.; RODRIGUES, F. A.; MAMIDI, S.; ALENCAR, S. A. de; LANNA, A. C.; VALDISSER, P. A. M. R.; BRONDANI, C.; NASCIMENTO JUNIOR, I. R. do; BORBA, T. C. de O.; VIANELLO, R. P. Transcriptoma para seca revela novos genes para o germoplasma do feijão comum mesoamericano. In: CONGRESSO NACIONAL DE PESQUISA DE FEIJÃO, 12., 2017, Piracicaba. Produtividade e sustentabilidade da cultura do feijão: do campo para a mesa: resumos. Piracicaba: CENA: IAC, 2017. p. 32. CONAFE| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 5. | | MIOTTO, Y. E.; TESSELE, C.; CZERMAINSKI, A. B. C.; PORTO, D. D.; FALAVIGNA, V. da S.; SARTOR, T.; CATTANI, A. M.; DELATORRE, C. A.; ALENCAR, S. A. de; SILVA JUNIOR, O. B. da; TOGAWA, R. C.; COSTA, M. M. do C.; PAPPAS JÚNIOR, G. J.; GRYNBERG, P.; OLIVEIRA, P. R. D. de; KVITSCHAL, M. V.; DENARDI, F.; BUFFON, V.; REVERS, L. F. Spring is coming: genetic analyses of the bud break date locus reveal candidate genes from the cold perception pathway to dormancy release in apple (Malus x domestica Borkh.) Frontiers in Plant Science, v. 10, article 33, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia; Embrapa Semiárido; Embrapa Uva e Vinho. |
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| Registros recuperados : 5 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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